diff --git a/sci-visualization/xyscan/Manifest b/sci-visualization/xyscan/Manifest
index 360edba4aba8c..c0908f9179d4c 100644
--- a/sci-visualization/xyscan/Manifest
+++ b/sci-visualization/xyscan/Manifest
@@ -1,2 +1 @@
-DIST xyscan-4.30-src.tgz 2700346 BLAKE2B 553e751a8d8320aca0bdfcf9facb528463d4b9179f134c0d2739837af8756760e8831f868737658f21c109c76f87a0c7284c65138b5585481e8201f664f3653e SHA512 f520f9d54893e738e8c93c7f0f4c5940b17e25d2a8dcd42632993b92460cecd388e6bfaa69f3905bdb9e77ea2ec876f3b93d82079d3383d6edc4cc8baec512b6
 DIST xyscan-4.66-src.tgz 7370446 BLAKE2B c52ab2a50a3655f9e224cc8f462d5f94e8bb6e948b1ea1670c981e394d921d20e0c21a0e6b340ed175a57673aacec87ea9fc9c452e475d1767538d9560ca27e0 SHA512 3c7e39ce80f1c67d13687c8982e73a9f8880dcbbc137ec5c65edcf4945a7de7e330c5ff1856d7792b486d2bcc2e4f34e6d6c2284e2e2a0d1e55b8afbc7b79e5e
diff --git a/sci-visualization/xyscan/xyscan-4.3.0.ebuild b/sci-visualization/xyscan/xyscan-4.3.0.ebuild
deleted file mode 100644
index 571e6042a5988..0000000000000
--- a/sci-visualization/xyscan/xyscan-4.3.0.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-MY_PV=$(ver_rs 2 '')
-inherit desktop qmake-utils
-
-DESCRIPTION="Tool for extracting data points from graphs"
-HOMEPAGE="http://rhig.physics.yale.edu/~ullrich/software/xyscan/"
-SRC_URI="http://rhig.physics.yale.edu/~ullrich/software/${PN}/Distributions/${MY_PV}/${PN}-${MY_PV}-src.tgz"
-S="${WORKDIR}/${PN}"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-RDEPEND="
-	app-text/poppler[qt5]
-	dev-qt/qtcore:5
-	dev-qt/qtgui:5
-	dev-qt/qtmultimedia:5
-	dev-qt/qtnetwork:5[ssl]
-	dev-qt/qtprintsupport:5
-	dev-qt/qtwidgets:5
-"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	default
-	sed -i \
-		-e "s:qApp->applicationDirPath() + \"/../docs\":\"${EPREFIX}/usr/share/doc/${PF}/html\":" \
-		src/xyscanWindow.cpp || die "Failed to fix docs path"
-}
-
-src_configure() {
-	eqmake5
-}
-
-src_install() {
-	dobin xyscan
-	local HTML_DOCS=( docs/. )
-	einstalldocs
-	newicon images/xyscanIcon.png xyscan.png
-	make_desktop_entry xyscan "xyscan data point extractor"
-}